Bioinformatics Training

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Bioinformatics Training Program

NTHRYS Biotech Labs offers Bioinformatics Training Program under below mentioned protocols. Candidates can opt their interested protocols from the list below. Please click Join button to pay the fee for selected protocol. Fees should be paid individually for all the selected protocols separately by clicking the button. Please save the payment proofs and send them as an attachment to
trainings [ a t ] nthrys [d 0 t] com to receive payment invoices and slot confirmations.

Please Check Modules as well as individual protocols (if any) under this training program. Module has its fee given in the fee structure table and individual fee in its block. Please communicate with our Help Desk Team via whatsapp on +91-9014935156 for any queries.

Modules

Bioinformatics Training Program at NTHRYS is provided under three different modules:

Basic Bioinforrmatics Training Module

Module I
Theory	Practical	Tools
History	Biological Databases	NCBI,MMDB,EMBL,DDBJ,SwissProt
Origin	Structure DB	PDB,CATH,SCOP,InterproScan,Signal Scan
Scope of Bioinformatics	Importance of Tools	N/A
Origin of Tools	Sequence DB’s	Scan,Prosite,Prodom, MotifScan,PFam
Sequence File Formats	Types	Genebank file format,FASTA format,EMBL format,UniprotKB/Swiss-Prot format, PIR/NBRF format
Module II
Application of Bioinformatics	Gene Prediction & Functional Analysis	ORF finder, GeneScan,GeneMark,Webgene
Sequence Comparison	EXPASy, EMBOSS	BLAST,Clustalw,DIALIGN
Structure File Formats	Repeat detection	Repeat Masker, dnadot
General Introduction to Molecular Biology	Hydrophobicity	Protparam
Restriction Site Mapping	Restriction site Detection	Webcutter,NEBCutter
Visualiztion Software	System Biology Vs /w	RasMol,SPDBV,JMol,Cn3D
Phylogenetic Analysis	Evolutionary Relationship	Phylogeny,HHperd, Biology workbench
Bioinformatics Dogma	Thermodynamics	ProTherm
Minor Project Concerning the concepts learnt

Advanced Bioinformatics Training Module

Theory	Practical	Tools
Module III
Statistical significance of Alignments	RNA sequence Analysis	Expasy
Sequence Databases for similar sequences	RNA fold Recognition	MFOLD,PFOLD
RNA sequence analysis	Secondary Structure Prediction	GOR4, ChouFasman, Predator, Phobious, HMMTOP
RNA structure Prediction	Abinitio Structure Prediction	QUARK,Bhageerath
Submitting Sequence	To NCBI	N/A
Scoring Types	PAM,BLOSUM	N/A
Types of Alignment	Global & Local	Grapics Sequences Pairwise BLAST & EMBOSS Aligns
Module IV
Molecular Phylogeny Prediction	Molecular evolutionary genetic Analysis	MEGA5,PHYLIP
EST and Gene Discovery		dbEST
Genome Analysis		Genid,FGNEGH,GLIMMER,GRAIL
Comparative modeling	Homology Modeling	MODELER, Swiss Model
Fold recognition	Threading	RAPTOR,3DPSSM,HHPRED
Model Evaluation	Structure Refinement	WHATCHECK,SAVES Server
Structure Validation	RMSD plot	CASP Server
Module V
Molecular Dynamics	Molecular Simulation	GROMACS,HOOMD blue,PYMOL
Molecular Modeling		CHARM-GUI,Amber
Primer Desinging	Three Primer designing tools along with concepts of behind tools	FastPCR,PRIMER3,Gene Fisher
Concepts of Biostatistics,biophysicsand biochemistry to help in dealing with databases/tools	Various tools used to useges, of subject with bioinformatics	Risk assessment tools,KinCohort software MultAssoc,Genetic Pathway analysis software
Minor project work in desired topic
Major project in desired topic Note: Major project as well as Minor project can also done by the student after selected time and respective certification can be issued on the respective date. For example if a MSc first year student joins in this training module he/she can complete the training module and take Training and take training certificate at the time and later come back after few months continue doing the minor project and then collect the certificate and come later at the time of final year academic project time and do the major project and collect the certificate for the same in respective dates and make use of the three certifications for a single fee structure. This module was designed after considering the advices given by the Bioinformatics Head of the departments of many reputed universities.

Pofessional Bioinformatics Training Module

Theory	Practicals	Tools Used
Module VI
Reconstruction Of Metabolic Pathway		Various pathway construction tools including KEGG
Pathway Databases		KEGG [all databases ]
Monte Carlo Simulation		Molecular dynamics tools
Docking of Small Molecules	Docking Software	GOLD, HYPERCHEM, AutoDOCK, Hex, Argus Lab
Module VII
Energy minimization	QSAR Studies	Build QSAR
Geometry Optimization	Descriptor Database	E-Dragon
Force Fields	Primer Designing	Primer3, FastPCR
Descriptors
BioPERL	BioPERL / PERL programming
Antibody engineering	Designing and modeling antibodies
HTML concepts	HTML
Concepts on designing a bioinformatics database
Concepts on various biotechnology aspects
Major project work in any one of the fields present in NTHRYS Bioinformatics Projects section.

Expertise Training Module on QSAR

Module VIII
Topic	Practical Approaches	Software / Tools
Free Energy Relationships	Hansch method : Linear Free Energy Relationships (physicochemical properties)	QSAR-PC: PAR
	Martin & Kubinyi : Non Linear Free Energy Relationships (physicochemical properties)
	Free Wilson mathematical model (structural elements)
Molecular Modeling	Curation	KNIME
	Molecular Descriptors (0D, 1D, 2D, 3D, 4D, 5D, 6D)	Chemistry Development Kit, PADel, RDKit, MOE, PubChem, Chemotypes
	Modeling Methods K-Nearest Neighbors (kNN) Random Forest Support Vector Machines (SVM)	ACD/ChemSketch, ACD/3D Viewer, Biomer, MOLEKEL, The Molecular Modelling Toolkit etc.,
Quantum Mechanical Model	Linear Scaling Methods QM/MM (Quantum Mechanics /Molecular Mechanics) QM Simulation Protonation States Cation-π and π-π interactions Using QM to calculate molecular properties QM derived FFs (Force Fields) QM Derived Partial Charges QM Descriptors in QSAR/QSPR (Quantitative Structure Property Relationship) Molecular Quantum similarity measures Variation particle number approach for molecular design	AlgoGen, ProToss, Epik etc.,
Topological Method	The Wiener Index The Platt and Gordon-Scantlebury Indices The Hosoya Index The Zagreb Indices The Balaban J Index Information Content Indices Autocorrelation Descriptors WHIM Descriptors Topochemical Atom Indices The Centric Index Triplet Indices The Randić Index Molecular Connectivity Indices Kappa Indices Flexibility Indices The Variable Connectivity Index Topological Descriptors in Inverse QSAR Electrotopological State Indices Biodescriptors Chirality	ADAPT, CODESSA, MathChem, MDL QSAR, TOPIX, etc.,
Pattern Recognization

Fee for Module VIII

Module VIII (Online Mode Only) - $1500 for 1 Month Duration (Training + 1 Minor Project) , $3000 for 3 Months Duration (Training + 1 Major Project + Publication Assistance as Co author Only), $2000 additional for First Authorship Publication Project Assistance along with training.

Note

Other Trainings under this field >> Bioinformatics Industrial Training, Bioinformatics Course Finishers Training, Bioinformatics Job Oriented Training, & Bioinformatics Research Training

Fee Structures for Bioinformatics Training

Fee details in Rs per student
	Basic Training Modules			Advanced Modules		Professional Modules
Fee	5 Days	10 Days	20 days	1 Month	45 Days	3 Months	4 Months	5 Months	6 Months
Modules Covered	Module I	Module I & II	Module I, II & Minor Project	Module I, II & III	Module I, II, III, IV & Minor Project	Module I, II, III, IV, V & Major Project	Module I, II, III, IV, V, Minor + Major Project	Module I, II, III, IV, V, VI, VII, Minor + Major Project	Module I, II, III, IV, V, VI, VII, Minor + Major Project [Out of which 1 will be publication project]
Individual	14900	19200	25100	36800	45300	69000	120900	150900	220900
Group 2 - 4	12100	17600	23400	35000	43300	67500	118800	145200	215400
Group 5 - 7	11000	15500	22200	33900	40100	65200	116400	143600	214700
Group 8 - 10	9900	14400	21100	30700	38900	62900	115000	140100	212100

Please choose a suitable time slot and inform our team via WhatsApp on +91-9014935156 (located at the top right corner) to receive the payment link for fee payment and slot confirmation.

Training based on Individual Protocols

Primer designing using Bioinformatics Tools

Fee: ₹ 480/-

Time: 2 Hours

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Note: NTHRYS currently operates through three registered entities: NTHRYS BIOTECH LABS (NBL), NTHRYS OPC PVT LTD (NOPC), and NTHRYS Project Greenshield (NPGS).

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Bioinformatics Training

Bioinformatics Training Program

Modules

Basic Bioinforrmatics Training Module

Advanced Bioinformatics Training Module

Pofessional Bioinformatics Training Module

Module VI

Module VII

Expertise Training Module on QSAR

Fee for Module VIII

Fee Structures for Bioinformatics Training

Training based on Individual Protocols

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Frequently Asked Questions (FAQs)

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