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Bioinformatics Workshops


NTHRYS provides Bioinformatics Workshops for interested candidates at its Hyderabad facility, Telangana. Please refer below for more details including Fee strctures, Eligibility, Protocols and Modules etc.,. Please do call / message / whatsapp for more details on 9849854748 [India - +91]

Eligibility: BSc / BTech / MSc / MTech / MPhil / PhD in any Life Sciences studying or completed students

Protocols / Techniques Covered

    In the present scenario as the demand for accurate, faster and qualitative research increased, this led to the advent of bioinformatics. Bioinformatics as a tool where errors made can be corrected to open newer approaches in R&D fields. With the advent of Bioinformatics we can develope and carry out research in various areas like nanotechnology, biochemistry, crop research, environmental biotechnology. The basic information of biology one can gains through training in bioinformatics is now a pre-requisite for any life sciences graduate.The recent rise in organism specific genome projects coming up from scientist desks, bioinformatics becomes the foundation to start these projects. It helps to develope research, start new research, maintain and organize the data and decode the results. On a global perspective in order to receive faster results bioinformatics is a necessary tool to embark on a career in life sciences division is bioinformatics.
    Bioinformatics Training Program at NTHRYS is provided under three different modules:

  1. Basic Bioinforrmatics Training Module

    Module I

    Theory

    Practical

    Tools

    History

    Biological Databases

    NCBI,MMDB,EMBL,DDBJ,SwissProt

    Origin

    Structure DB

    PDB,CATH,SCOP,InterproScan,Signal Scan

    Scope of Bioinformatics

    Importance of Tools

    N/A

    Origin of Tools

    Sequence DB’s

    Scan,Prosite,Prodom, MotifScan,PFam

    Sequence File Formats

    Types

    Genebank file format,FASTA format,EMBL format,UniprotKB/Swiss-Prot format, PIR/NBRF format

    Module II

    Application of Bioinformatics

    Gene Prediction & Functional Analysis

    ORF finder, GeneScan,GeneMark,Webgene

    Sequence Comparison

    EXPASy, EMBOSS

    BLAST,Clustalw,DIALIGN

    Structure File Formats

    Repeat detection

    Repeat Masker, dnadot

    General Introduction to Molecular Biology

    Hydrophobicity

    Protparam

    Restriction Site Mapping

    Restriction site Detection

    Webcutter,NEBCutter

    Visualiztion  Software

    System Biology Vs /w

    RasMol,SPDBV,JMol,Cn3D

    Phylogenetic Analysis

    Evolutionary Relationship

    Phylogeny,HHperd, Biology workbench

    Bioinformatics Dogma

    Thermodynamics

    ProTherm

    Minor Project Concerning the concepts learnt

  2. Advanced Bioinformatics Training Module

    Theory

    Practical

    Tools

    Module III

    Statistical significance of Alignments

    RNA sequence Analysis

    Expasy

    Sequence Databases for similar sequences

    RNA fold Recognition

    MFOLD,PFOLD

    RNA sequence analysis

    Secondary Structure Prediction

    GOR4, ChouFasman, Predator, Phobious, HMMTOP

    RNA structure Prediction

    Abinitio Structure Prediction

    QUARK,Bhageerath

    Submitting Sequence

    To NCBI

    N/A

    Scoring Types

    PAM,BLOSUM

    N/A

    Types of Alignment

    Global & Local

    Grapics Sequences Pairwise BLAST & EMBOSS Aligns

    Module IV

    Molecular Phylogeny Prediction

    Molecular evolutionary genetic Analysis

    MEGA5,PHYLIP

    EST and Gene Discovery

     

    dbEST

    Genome Analysis

     

    Genid,FGNEGH,GLIMMER,GRAIL

    Comparative modeling

    Homology Modeling

    MODELER, Swiss Model

    Fold recognition

    Threading

    RAPTOR,3DPSSM,HHPRED

    Model Evaluation

    Structure Refinement

    WHATCHECK,SAVES Server

    Structure Validation

    RMSD plot

    CASP Server

    Module V

    Molecular Dynamics

    Molecular Simulation

    GROMACS,HOOMD blue,PYMOL

    Molecular Modeling

     

    CHARM-GUI,Amber

    Primer Desinging

    Three Primer designing tools along with concepts of behind tools

    FastPCR,PRIMER3,Gene Fisher

    Concepts of Biostatistics,biophysicsand biochemistry to help in dealing with databases/tools

    Various tools  used to useges, of subject with bioinformatics

    Risk assessment tools,KinCohort software MultAssoc,Genetic Pathway analysis software

    Minor project work in desired topic

    Major project in desired topic

    Note: Major project as well as Minor project can also done by the student after selected time and respective certification can be issued on the respective date. For example if a MSc first year student joins in this training module he/she can complete the training module and take Training and take training certificate at the time and later come back after few months continue doing the minor project and then collect the certificate and come later at the time of final year academic project time and do the major project and collect the certificate for the same in respective dates and make use of the three certifications for a single fee structure.
    This module was designed after considering the advices given by the Bioinformatics Head of the departments of many reputed universities.

  3. Pofessional Bioinformatics Training Module

    Theory Practicals Tools Used

    Module VI

    Reconstruction Of Metabolic Pathway

    Various pathway construction tools including KEGG

    Pathway Databases

    KEGG [all databases ]

    Monte Carlo Simulation

    Molecular dynamics tools

    Docking of Small Molecules

    Docking Software

    GOLD, HYPERCHEM, AutoDOCK, Hex, Argus Lab

    Module VII

    Energy minimization

    QSAR Studies

    Build QSAR

    Geometry Optimization

    Descriptor Database

    E-Dragon

    Force Fields

    Primer Designing

    Primer3, FastPCR

    Descriptors

    BioPERL

    BioPERL / PERL programming

    Antibody engineering

    Designing and modeling antibodies

    HTML concepts

    HTML

    Concepts on designing a bioinformatics database

    Concepts on various biotechnology aspects

    Major project work in any one of the fields present in NTHRYS Bioinformatics Projects section.

Fee Structures for Bioinformatics Workshops

Fee details in Rs per student
Fee 5 Days 10 Days
Individual 3000 3200
Group 2 - 4 2800 3000
Group 5 - 7 2800 3000
Group 8 - 10 4400 4700





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NTHRYS NEWS

  1. Oct - 10th - 2015: Product design and standardization services are available under selected streams under Biotechnology at NTHRYS. Interested candidates please contact us with their detailed requirements.
  2. Oct - 1st - 2015: Tissue Engieering Projects are available from Dec 2015 at NTHRYS Hyderabad. Projects depended on 3D Printed ECM models are about to launch under this module
  3. Sep - 22nd - 2015: New methodologies under Biomedical Projects are underway to take their practical shape from January 2016 at NTHRYS. These projects invovle not only Medical Applications oriented one's but also Robobioics modules
  4. Sep - 15th - 2015: NTHRYS is launchig its Research Methodology Training Program from Dec 2015. Interested candidates please contact us.
  5. Sep - 10th - 2015: Thesis Assistance service / PhD Report Making Service / Dissertation report making enforcing Plagiarism rule using Turnitin Software is provided at NTHRYS Thesis Assistance Service
  6. Sep - 2nd - 2015: DNA Barcoding Project Assistance Service offered at NTHRYS. Contact for more details
  7. Aug - 24th - 2015: Mathematics PhD assistance has started at NTHRYS. Please contact for more details
  8. Aug - 17th - 2015: DST & DBT Project Proposal Assistance as well Project Maintenance and Management services are provided at NTHRYS. Please contact for more details
  9. Aug - 5th - 2015: Custom Bionformatics Database design and deployment service provided by NTHRYS. Algorithm development assistance service can be collaterally merged in the same service. Please contact for more details
  10. July - 28th - 2015: Custom Crop specific Biofertilizers as well as pest / crop specific Biopesticides design / formulation service is provided by NTHRYS. Please contact for more details
  11. July - 22nd - 2015: NTHRYS has launched its pioneering project works under the domain Computational Neuroscience domain. Please call for more details
  12. July - 16th - 2015: Php based Artificial Intelligence algorithm designing assistance services are offered by NTHRYS. Please contact for more details
  13. July - 2nd - 2015: NTHRYS Launches Medical Projects Service under a broad range of Medical Sectors. Please visit the following Medical Projects Page for more details
  14. June - 30th - 2015: NTHRYS has reduced 20% on all Project & Training fee structures to Academic Candidates under the fields of Biotechnology & Bioinformatics
  15. June - 20th - 2015: NTHRYS Launched Compound Prediction Services for NMR, GC-MS, FTIR & UV Analysis Data. Contact Us for more details
  16. June - 2nd - 2015: NTHRYS now can assist Researchers & Academicians to procure Lab Animals from CPCSEA certified facilities located across the nation.
  17. May - 31st - 2015: NTHRYS now offers PhD Topic Selection, PhD Methodology design & PhD Practical Protocol Design assistance at affordable costs.
  18. May - 23rd - 2015: NTHRYS is proud to announce the launch of its much awaited Job Oriented Bioinformatics Training Program
  19. May - 15th - 2015: Commence of Training Program in Regression Analysis of Banking Data using SAS at NTHRYS
  20. May - 10th - 2015: Launch of Food Technology Projects from 2014 October
  21. April - 20th - 2015: Publication standard projects methodology assistance services offered by NTHRYS under the fields of Biotechnology, Bioinformatics, Embedded Systems, SAS, Environmental Sciences, Physiscs & Maths
  22. Feb - 8th - 2015: Launch of NGS Training Programme from 2015 January

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